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            },
            "children": [

            ]
          },
          {
            "data": "GeneticVariability (40)",
            "attr": {
              "packageList": "BBCAnalyzer,beadarraySNP,BiocOncoTK,BUMHMM,CAnD,chopsticks,Clomial,CNVtools,CrispRVariants,deepSNV,DOQTL,FRGEpistasis,GeneGeneInteR,GENESIS,GGtools,GSReg,GWASTools,hapFabia,ISoLDE,martini,metagenomeSeq,missMethyl,omicsPrint,pathVar,phyloseq,qpgraph,Rgin,RIVER,RLMM,Rsubread,RTN,samExploreR,SeqVarTools,SIAMCAT,SNPchip,snpStats,trigger,trio,TVTB,VariantTools",
              "id": "GeneticVariability"
            },
            "children": [

            ]
          },
          {
            "data": "SNP (72)",
            "attr": {
              "packageList": "ASAFE,BBCAnalyzer,beadarraySNP,BiocOncoTK,BSgenome,CAnD,CGEN,chopsticks,CNVrd2,copynumber,crlmm,customProDB,deepSNV,DOQTL,DRIMSeq,ensemblVEP,gaucho,gcatest,GEM,geneAttribution,GeneGeneInteR,GeneRegionScan,GENESIS,GenomicAlignments,genoset,genotypeeval,GenRank,GGtools,GMRP,GWASTools,hapFabia,hierGWAS,iASeq,iBMQ,iCNV,IMAS,INPower,InterMineR,inveRsion,ISoLDE,IVAS,lfa,logicFS,martini,MassArray,mBPCR,metaCCA,MinimumDistance,mQTL.NMR,oligo,OPWeight,qpgraph,Rgin,RIVER,RLMM,Rsubread,RTN,sangerseqR,sapFinder,scoreInvHap,semisup,SeqVarTools,SICtools,siggenes,SNPchip,SNPediaR,snpStats,systemPipeR,trigger,trio,VariantAnnotation,VariantFiltering",
              "id": "SNP"
            },
            "children": [

            ]
          },
          {
            "data": "Transcription (117)",
            "attr": {
              "packageList": "affylmGUI,alpine,altcdfenvs,ampliQueso,annmap,ASpli,AUCell,BAC,BicARE,BiFET,BiocOncoTK,birta,birte,BitSeq,BUMHMM,CAGEfightR,CAGEr,casper,ccmap,CellScore,CexoR,ChIPanalyser,ChIPComp,ChIPexoQual,ChIPSeqSpike,chromswitch,CoGAPS,consensusSeekeR,CoRegNet,covRNA,crossmeta,CSAR,ctsGE,customProDB,DBChIP,DEFormats,DESeq2,diffcoexp,DTA,edgeR,ELMER,erccdashboard,EventPointer,ExiMiR,fCCAC,gCMAPWeb,geecc,GOexpress,goseq,GSALightning,GSRI,Guitar,Harman,IMAS,InPAS,iSEE,IsoformSwitchAnalyzeR,ISoLDE,IVAS,ivygapSE,les,limma,Linnorm,M3C,MBASED,MBttest,mosaics,motifcounter,motifRG,NarrowPeaks,netresponse,omicsPrint,pandaR,pathprint,psichomics,pwOmics,qpgraph,QuaternaryProd,Rcade,RcisTarget,regionReport,rHVDM,RIVER,RNAdecay,rnaSeqMap,roar,RRHO,rTRM,rTRMui,SC3,scde,scfind,scmap,SELEX,SEPIRA,SGSeq,simpleaffy,snm,splicegear,spliceR,SplicingGraphs,SPONGE,STAN,subSeq,TFARM,TFBSTools,TFEA.ChIP,TFHAZ,tigre,transcriptR,TransView,trena,TSRchitect,tximport,variancePartition,wiggleplotr,xps",
              "id": "Transcription"
            },
            "children": [

            ]
          }
        ]
      },
      {
        "data": "BiologicalQuestion (614)",
        "attr": {
          "packageList": "anamiR,ChIPanalyser,consensusSeekeR,discordant,geecc,GSALightning,LINC,methInheritSim,methylInheritance,OncoSimulR,rexposome,RJMCMCNucleosomes,similaRpeak,TFARM,TFHAZ,YAPSA",
          "id": "BiologicalQuestion"
        },
        "children": [
          {
            "data": "AlternativeSplicing (31)",
            "attr": {
              "packageList": "alpine,ASpli,BitSeq,customProDB,DEXSeq,DRIMSeq,edgeR,erccdashboard,EventPointer,flipflop,GeneStructureTools,GSReg,IMAS,InPAS,IntEREst,InterMineR,IsoformSwitchAnalyzeR,IVAS,kissDE,limma,MBttest,PathwaySplice,psichomics,puma,regsplice,SGSeq,spliceR,SplicingGraphs,SPLINTER,TIN,wiggleplotr",
              "id": "AlternativeSplicing"
            },
            "children": [

            ]
          },
          {
            "data": "Coverage (96)",
            "attr": {
              "packageList": "alpine,ASpli,ATACseqQC,BadRegionFinder,bamsignals,Basic4Cseq,BasicSTARRseq,BBCAnalyzer,BPRMeth,BubbleTree,BUMHMM,CAGEfightR,ChIPanalyser,ChIPComp,ChIPexoQual,chipseq,ChIPSeqSpike,CNAnorm,CNVPanelizer,CNVrd2,compEpiTools,consensusSeekeR,CopywriteR,csaw,DEScan2,diffcoexp,diffHic,DMCHMM,DMRcaller,DropletUtils,edgeR,EnrichedHeatmap,ensembldb,esATAC,fCCAC,GDSArray,geneXtendeR,GenomicAlignments,GenomicFiles,GenomicRanges,GenomicScores,GreyListChIP,Guitar,HDF5Array,HelloRanges,HilbertCurve,Imetagene,InPAS,IntEREst,karyoploteR,loci2path,M3D,MADSEQ,MBttest,MDTS,MEDIPS,metagene,methimpute,methylPipe,MIRA,nucleR,ORFik,plyranges,PowerExplorer,PureCN,QuasR,ramwas,RCAS,recount,recoup,regionReport,restfulSE,rGREAT,RiboProfiling,RJMCMCNucleosomes,RNAprobR,Rsamtools,runibic,Scale4C,scater,scone,seqCAT,sevenC,SICtools,SMITE,soGGi,srnadiff,SummarizedExperiment,systemPipeR,TarSeqQC,TFHAZ,topdownr,transcriptR,traseR,TVTB,wiggleplotr",
              "id": "Coverage"
            },
            "children": [

            ]
          },
          {
            "childnum": 0,
            "data": "DemethylateRegionDetection",
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            ]
          },
          {
            "childnum": 0,
            "data": "DenovoAssembler",
            "children": [

            ]
          },
          {
            "data": "DifferentialExpression (261)",
            "attr": {
              "packageList": "ABSSeq,acde,adaptest,AffyExpress,affylmGUI,AgiMicroRna,ALDEx2,AMOUNTAIN,ampliQueso,anamiR,Anaquin,anota,anota2seq,apeglm,ArrayTools,ASpli,BADER,ballgown,BASiCS,BatchQC,baySeq,BGmix,bgx,biobroom,BioNet,BioNetStat,biotmle,BitSeq,blima,BLMA,bridge,casper,CausalR,ccmap,clippda,clusterSeq,coexnet,CoGAPS,coGPS,compcodeR,consensusOV,copa,Cormotif,cqn,crossmeta,ctsGE,cummeRbund,daMA,DART,ddCt,debrowser,DEComplexDisease,DeconRNASeq,DEDS,DEFormats,DEGraph,DEGreport,DEGseq,DEP,derfinder,derfinderHelper,derfinderPlot,DESeq,DESeq2,DEsingle,DEsubs,DEXSeq,dexus,DFP,diffcoexp,diffGeneAnalysis,DMRcate,DRIMSeq,DSS,DTA,EBarrays,EBSEA,EBSeq,EBSeqHMM,EDASeq,edge,edgeR,eegc,EGSEA,EMDomics,EnrichmentBrowser,epigenomix,erccdashboard,fabia,factDesign,fdrame,FEM,fgsea,flagme,gaga,gage,gCMAPWeb,gCrisprTools,GDCRNATools,genefu,GeneSelectMMD,GeneSelector,geNetClassifier,GenoGAM,gep2pep,Glimma,GlobalAncova,globalSeq,globaltest,GOexpress,goSTAG,gprege,GSALightning,GSAR,GSEABenchmarkeR,gsean,GSRI,HDTD,HEM,HTqPCR,HTSFilter,iCheck,ideal,iGC,IMAS,ImpulseDE2,IntEREst,InterMineR,IsoformSwitchAnalyzeR,IsoGeneGUI,isomiRs,IVAS,IWTomics,JunctionSeq,lapmix,les,limma,limmaGUI,LineagePulse,Linnorm,lmdme,LMGene,logitT,LPE,M3Drop,maanova,macat,maigesPack,manta,mAPKL,MAST,MBttest,MEDIPS,MergeMaid,messina,metaArray,metagenomeSeq,metahdep,metaSeq,metaseqR,MethylMix,miRNApath,MmPalateMiRNA,MODA,monocle,MoonlightR,Mulcom,multtest,NanoStringDiff,netresponse,NOISeq,nudge,OCplus,oligo,omicplotR,omicRexposome,oposSOM,OrderedList,PathNet,pathview,pbcmc,pcot2,PECA,phantasus,phenoTest,piano,pickgene,pint,plgem,PLPE,plw,polyester,Polyfit,PowerExplorer,PROPER,prot2D,psichomics,puma,QUBIC,RankProd,RBM,Rcade,RDAVIDWebService,recount,regionReport,regsplice,rgsepd,RNAdecay,rnaSeqMap,RnaSeqSampleSize,Rnits,ROC,ROTS,RTCGAToolbox,RUVSeq,safe,SAGx,SC3,scDD,scde,SDAMS,segmentSeq,SeqGSEA,sigaR,siggenes,signet,sigPathway,similaRpeak,simpleaffy,singleCellTK,SMITE,snm,SpeCond,spliceR,spliceSites,splineTimeR,sRAP,srnadiff,sscore,ssize,subSeq,survcomp,switchde,TCC,TCGAbiolinks,TCGAbiolinksGUI,TCseq,timecourse,ToPASeq,tRanslatome,TTMap,tweeDEseq,twilight,unifiedWMWqPCR,variancePartition,vidger,waveTiling,webbioc,XBSeq,XDE,xps",
              "id": "DifferentialExpression"
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          },
          {
            "data": "DifferentialMethylation (33)",
            "attr": {
              "packageList": "ChIPSeqSpike,COHCAP,coMET,DMCHMM,DMRcaller,DMRcate,DMRforPairs,dmrseq,DSS,edgeR,ENmix,EpiDISH,FEM,IWTomics,M3D,mCSEA,methInheritSim,methylInheritance,MethylMix,methyvim,minfi,missMethyl,MoonlightR,msgbsR,omicRexposome,qsea,ramwas,regionReport,REMP,RnBeads,SMITE,TCGAbiolinks,TCGAbiolinksGUI",
              "id": "DifferentialMethylation"
            },
            "children": [

            ]
          },
          {
            "data": "DifferentialPeakCalling (12)",
            "attr": {
              "packageList": "chromstaR,chromswitch,csaw,derfinder,DiffBind,geneXtendeR,GenoGAM,GreyListChIP,IWTomics,MMDiff2,normr,regionReport",
              "id": "DifferentialPeakCalling"
            },
            "children": [

            ]
          },
          {
            "data": "DifferentialSplicing (24)",
            "attr": {
              "packageList": "alpine,ASpli,BitSeq,DEXSeq,DRIMSeq,edgeR,erccdashboard,EventPointer,GeneStructureTools,IMAS,InPAS,IntEREst,IsoformSwitchAnalyzeR,IVAS,kissDE,limma,MBttest,PathwaySplice,PECA,psichomics,puma,regsplice,spliceR,TIN",
              "id": "DifferentialSplicing"
            },
            "children": [

            ]
          },
          {
            "data": "DNA3DStructure (4)",
            "attr": {
              "packageList": "DNAshapeR,FitHiC,MACPET,sevenC",
              "id": "DNA3DStructure"
            },
            "children": [

            ]
          },
          {
            "data": "DriverMutation (1)",
            "attr": {
              "packageList": "maftools",
              "id": "DriverMutation"
            },
            "children": [

            ]
          },
          {
            "data": "FunctionalPrediction (13)",
            "attr": {
              "packageList": "BasicSTARRseq,diggit,drawProteins,EGAD,garfield,GeneStructureTools,InterMineR,IsoformSwitchAnalyzeR,OmaDB,PCAN,progeny,RIVER,viper",
              "id": "FunctionalPrediction"
            },
            "children": [

            ]
          },
          {
            "childnum": 0,
            "data": "GeneFusionDetection",
            "children": [

            ]
          },
          {
            "data": "GenePrediction (8)",
            "attr": {
              "packageList": "EGAD,geneAttribution,GRridge,IntramiRExploreR,IsoformSwitchAnalyzeR,R3CPET,RandomWalkRestartMH,REMP",
              "id": "GenePrediction"
            },
            "children": [

            ]
          },
          {
            "data": "GeneRegulation (72)",
            "attr": {
              "packageList": "anamiR,anota2seq,ATACseqQC,BasicSTARRseq,BCRANK,BiFET,blima,BPRMeth,BUMHMM,CAGEfightR,chromVAR,cleanUpdTSeq,CNEr,CoRegNet,CRISPRseek,crisprseekplus,DeepBlueR,diggit,eegc,ELMER,GDCRNATools,geneplast,GRENITS,GSReg,GSRI,GUIDEseq,IMAS,InPAS,INSPEcT,InterMineR,ISoLDE,IVAS,LINC,LOLA,MatrixRider,MethylMix,MIRA,MoonlightR,MoPS,mpra,NADfinder,omicRexposome,pandaR,pqsfinder,profileScoreDist,progeny,qpgraph,RcisTarget,RIVER,RNAdecay,Rsubread,RTN,RTNduals,RTNsurvival,rTRM,rTRMui,samExploreR,SELEX,SEPIRA,SpidermiR,SPONGE,StarBioTrek,TCGAbiolinks,TCGAbiolinksGUI,TFBSTools,TFEA.ChIP,tigre,tRanslatome,trena,triplex,TSRchitect,viper",
              "id": "GeneRegulation"
            },
            "children": [

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          },
          {
            "data": "GeneSetEnrichment (98)",
            "attr": {
              "packageList": "ABAEnrichment,anamiR,attract,AUCell,BgeeDB,BioNetStat,BLMA,CAFE,Category,cellTree,chipenrich,clusterProfiler,CoGAPS,cogena,CompGO,cpvSNP,CTDquerier,ctsGE,dcGSA,DOSE,edgeR,eegc,EGSEA,EnrichmentBrowser,enrichplot,facopy,FGNet,fgsea,gage,gCMAPWeb,gCrisprTools,GDCRNATools,geecc,gep2pep,GISPA,GOexpress,GOfuncR,GOFunction,GOpro,goProfiles,goSTAG,GOstats,GRridge,GSALightning,GSEABase,GSEABenchmarkeR,gsean,GSReg,GSRI,GSVA,iBBiG,ideal,InterMineR,ISoLDE,limma,loci2path,LOLA,MAGeCKFlute,MAST,mdgsa,MetaGxOvarian,mgsa,MIGSA,missMethyl,MoonlightR,npGSEA,oposSOM,oppar,pathVar,pathview,PathwaySplice,paxtoolsr,piano,PPInfer,qusage,RCAS,RcisTarget,ReactomePA,ReportingTools,rGREAT,RGSEA,rgsepd,RITAN,RTN,RTNsurvival,safe,SAGx,SeqGSEA,SigCheck,sincell,singscore,SISPA,splineTimeR,sRAP,systemPipeR,TFEA.ChIP,TissueEnrich,transcriptogramer",
              "id": "GeneSetEnrichment"
            },
            "children": [

            ]
          },
          {
            "data": "GeneSignaling (6)",
            "attr": {
              "packageList": "EGSEA,hipathia,MetaboSignal,MetaGxOvarian,pwOmics,RankProd",
              "id": "GeneSignaling"
            },
            "children": [

            ]
          },
          {
            "data": "GeneTarget (17)",
            "attr": {
              "packageList": "anamiR,BayesKnockdown,bioCancer,eegc,EGSEA,GDCRNATools,gespeR,IntramiRExploreR,MetaboSignal,networkBMA,Onassis,Pi,pwOmics,RCAS,RcisTarget,samExploreR,SEPIRA",
              "id": "GeneTarget"
            },
            "children": [

            ]
          },
          {
            "data": "GenomeAnnotation (38)",
            "attr": {
              "packageList": "AnnotationDbi,annotatr,ASpli,branchpointer,compEpiTools,DeepBlueR,DelayedArray,DMRcate,EnrichedHeatmap,garfield,GDSArray,geneXtendeR,GenomeInfoDb,GenomicFeatures,GenomicRanges,GreyListChIP,HDF5Array,HelloRanges,HilbertCurve,InterMineR,IWTomics,LOLA,mCSEA,MEDIPS,microRNA,MIRA,Organism.dplyr,QDNAseq,RCAS,rGREAT,RNAprobR,Rsubread,samExploreR,scPipe,SMITE,STAN,SummarizedExperiment,TSRchitect",
              "id": "GenomeAnnotation"
            },
            "children": [

            ]
          },
          {
            "data": "GenomeAssembly (1)",
            "attr": {
              "packageList": "contiBAIT",
              "id": "GenomeAssembly"
            },
            "children": [

            ]
          },
          {
            "data": "GenomeWideAssociation (21)",
            "attr": {
              "packageList": "anota2seq,ASAFE,bacon,coMET,gcatest,GEM,geneAttribution,GeneGeneInteR,GENESIS,genphen,GISPA,globalSeq,iCARE,InterMineR,martini,metaCCA,Pi,Rgin,rqt,RVS,SISPA",
              "id": "GenomeWideAssociation"
            },
            "children": [

            ]
          },
          {
            "data": "GenomicVariation (26)",
            "attr": {
              "packageList": "AneuFinder,branchpointer,CINdex,CNAnorm,cpvSNP,CrispRVariants,facopy,FindMyFriends,geneAttribution,iGC,kissDE,MADSEQ,missMethyl,myvariant,panelcn.mops,RareVariantVis,Rariant,RIVER,scoreInvHap,semisup,seqCAT,signeR,SomaticSignatures,TitanCNA,TVTB,YAPSA",
              "id": "GenomicVariation"
            },
            "children": [

            ]
          },
          {
            "childnum": 0,
            "data": "GermlineMutation",
            "children": [

            ]
          },
          {
            "data": "HistoneModification (5)",
            "attr": {
              "packageList": "chipenrich,ChIPSeqSpike,chromstaR,chromswitch,geneXtendeR",
              "id": "HistoneModification"
            },
            "children": [

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          },
          {
            "childnum": 0,
            "data": "IndelDetection",
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            ]
          },
          {
            "data": "LinkageDisequilibrium (4)",
            "attr": {
              "packageList": "ASAFE,CNVrd2,hierGWAS,Pi",
              "id": "LinkageDisequilibrium"
            },
            "children": [

            ]
          },
          {
            "childnum": 0,
            "data": "MetagenomeAssembly",
            "children": [

            ]
          },
          {
            "childnum": 0,
            "data": "MicrosatelliteDetection",
            "children": [

            ]
          },
          {
            "data": "MotifAnnotation (17)",
            "attr": {
              "packageList": "branchpointer,coMET,DiffLogo,ELMER,LedPred,MatrixRider,motifbreakR,motifcounter,MotifDb,motifmatchr,motifStack,MotIV,PWMEnrich,RCAS,RcisTarget,SELEX,TFBSTools",
              "id": "MotifAnnotation"
            },
            "children": [

            ]
          },
          {
            "data": "MotifDiscovery (7)",
            "attr": {
              "packageList": "BCRANK,motifRG,pqsfinder,RCAS,rGADEM,SELEX,TFBSTools",
              "id": "MotifDiscovery"
            },
            "children": [

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          },
          {
            "data": "NetworkEnrichment (36)",
            "attr": {
              "packageList": "BioCor,BioNet,CEMiTool,CoRegNet,CTDquerier,DEGraph,DeMAND,DEsubs,diggit,EGAD,EGSEA,EnrichmentBrowser,FELLA,FEM,FGNet,GDCRNATools,GSEABenchmarkeR,gsean,ibh,miRNApath,miRsponge,MoonlightR,PathNet,PathwaySplice,paxtoolsr,RITAN,RTN,RTNduals,RTNsurvival,SANTA,signet,SMITE,splineTimeR,ToPASeq,viper,vulcan",
              "id": "NetworkEnrichment"
            },
            "children": [

            ]
          },
          {
            "data": "NetworkInference (42)",
            "attr": {
              "packageList": "apComplex,BayesKnockdown,BioNetStat,birte,CNORfeeder,coexnet,CoRegNet,epiNEM,FRGEpistasis,GDCRNATools,GENIE3,GRENITS,joda,KEGGlincs,lpNet,minet,miRLAB,nem,netbenchmark,networkBMA,pandaR,PANR,Path2PPI,Pigengene,ppiStats,predictionet,qpgraph,R3CPET,RandomWalkRestartMH,rHVDM,RITAN,RTN,RTNduals,RTNsurvival,ScISI,SEPIRA,SPEM,splineTimeR,SPONGE,tigre,trena,TRONCO",
              "id": "NetworkInference"
            },
            "children": [

            ]
          },
          {
            "data": "NucleosomePositioning (3)",
            "attr": {
              "packageList": "ATACseqQC,nucleR,RJMCMCNucleosomes",
              "id": "NucleosomePositioning"
            },
            "children": [

            ]
          },
          {
            "data": "PeakDetection (14)",
            "attr": {
              "packageList": "BasicSTARRseq,CAGEfightR,ChIPanalyser,chromstaR,consensusSeekeR,DEScan2,flowQB,gcapc,geneXtendeR,Linnorm,MACPET,NADfinder,normr,proFIA",
              "id": "PeakDetection"
            },
            "children": [

            ]
          },
          {
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            "data": "TimeCourse (49)",
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      {
        "data": "Technology (990)",
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          },
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            "data": "ddPCR (2)",
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              "packageList": "ddPCRclust,twoddpcr",
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              "packageList": "apComplex,BRAIN,CAMERA,Cardinal,CATALYST,cosmiq,customProDB,DAPAR,DEP,Doscheda,flagme,gaga,IPO,isobar,LOBSTAHS,MAIT,MassArray,MassSpecWavelet,Metab,metabomxtr,metaMS,MetCirc,MSGFgui,MSGFplus,msmsEDA,msmsTests,MSnbase,MSnID,msPurity,MSstats,MSstatsQC,MSstatsQCgui,mzID,mzR,PAPi,Pbase,pepXMLTab,PGA,pgca,plgem,proBAMr,PROcess,proFIA,pRoloc,Prostar,proteoQC,ProtGenerics,qcmetrics,Rdisop,Risa,RMassBank,rols,ropls,rpx,rTANDEM,sapFinder,SDAMS,shinyTANDEM,SIMAT,specL,statTarget,SWATH2stats,synapter,TargetSearch,tofsims,topdownr,TPP,xcms,yamss",
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