ff9e48a8c04f9aaa62c927fa9d0629ddaea98db5f36a1fa8e1f01cf1974f74e1 828 CITATION
c2c41b05270cde8cac613d8b3f9f9d0b38ffc6b5595dd738ecac35007dfba756 2223 DESCRIPTION
065b565b044a8d918e0b623e810a90dd5a18cc7f2b002d71545099084f8b1292 1747 INDEX
3f3c581880b8e15b02e17532c3199480e14248b7555aae01b9fe159cccb24cff 1051 Meta/Rd.rds
04abba1fbf14e9ebfa5018fd8a740842010982b85aad6aef0f672275b088d982 122 Meta/features.rds
935838c6c7bf09d506727ae075ae71525a3a10c0930026af42e2c0b117967b88 991 Meta/hsearch.rds
99c87d8cee661d6e31928dcc3a73cc8352606dfaad83ab0e6ed4a0896fea2081 382 Meta/links.rds
c99897b98018c3381043602f2e81ee5eb8f395fc5c8fb48df2679f55c462ab93 732 Meta/nsInfo.rds
c7d104d4a0d15bb55ddda6e41ff5f6993c853694339cd3ebe1b312f531a1d869 1760 Meta/package.rds
674f008575219ffcf945efbdbd6a881954067dd357ca6e1af326e782caf8b7a1 286 Meta/vignette.rds
3dcc4efb2f3a2cc0ce29932779a9cb4bd046658a9e393037685107fea0cc9f97 1585 NAMESPACE
30bd428f0454e7eb80db4eda29f2c32a17dcb341136b424087457061775489d6 1006 NEWS.md
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/LACHESIS
74a756fb87a55b5d8de99c5d3a116dab1abc1a753aabf860539b7b645deb57cf 168219 R/LACHESIS.rdb
af554055827f4b8f8074b01993d7a592680ffd27a50c76efdc2cb728992423dd 895 R/LACHESIS.rdx
9a3867a109f0d60b6460b3f991081e6594bfcf617e8a434d662a3e3e034b4beb 3094 README.md
e46e2bcc411234d7ecc2000c3095f40c5d3e3cbe451c0fb304b89d8054dc6453 1518 doc/index.html
8d7e634780dc85f2d024db81b8df64e087ded8643cf355ac3c4edc6b065fb665 33393 doc/vignette_LACHESIS.R
d6e27cb6cb42620a47411d655d7ba1a4495ef2cb40fc6a1da5a5e3d03e2ce13f 55980 doc/vignette_LACHESIS.Rmd
d209ab7de8c05d2000e1e93215f920ce57b3fc39bf0cdf785b7eb0d41f328942 1915696 doc/vignette_LACHESIS.html
facb3d0729ce9368492ae25f07c6cf0f7fdda42f56a2190bda3e7b43273ea028 199760 extdata/ACESeq/NBE11_comb_pro_extra2.59_0.83.txt
b7030d23be058b6e35c1cd1a0cbf4d82edc50667cac9bf3eeecb88f243f7723d 737 extdata/ASCAT/S98.segments.txt
b30d9e826e9ae393ce0151af8f3b19d55990a724a12e0ae10e42e22a5ff52567 155789 extdata/LACHESIS_package_structure.png
facb3d0729ce9368492ae25f07c6cf0f7fdda42f56a2190bda3e7b43273ea028 199760 extdata/NBE11/NBE11_comb_pro_extra2.59_0.83.txt
ec88d43fa66849ff7ffbb96ea8eba5127fec07e704074f24f9a600f47184ed7f 2838698 extdata/NBE11/snvs_NBE11_somatic_snvs_conf_8_to_10.vcf
a790bcd69b545de728f2814b4ee0cd900e2b2c49ab11fa61192665d09d94e2c0 495210 extdata/NBE15/NBE15_comb_pro_extra2.51_1.txt
4c57265e845bc90aeb85de3e111fb718f640cf4bb8db5a2f7c88f24b8f9fa3d0 1615136 extdata/NBE15/snvs_NBE15_somatic_snvs_conf_8_to_10.vcf
59e669f9bc0d0da7add03a477bcfefeae133f4eb18be3d664dba1b09991846e4 26368 extdata/NBE15_Decomposed_MutationType_Probabilities.txt
02d67652b86794fd033ab8c783b8c40914357ba50bffada1cbbb441f516e61d3 42705 extdata/NBE26/NBE26_comb_pro_extra3.25_0.88.txt
5b6b4d758f68a0808a187b263ba844de9dfafb402f4b6bb91eef9841759aadb5 211694 extdata/NBE26/snvs_NBE26_somatic_snvs_conf_8_to_10.vcf
1bcde733bf8e0d2846ec7ee8f8a07762d1c3c6ecf31fd59004977c2bc4a25bb9 126392 extdata/NBE63/NBE63_comb_pro_extra2.3_0.97.txt
f280cc3c0f5615057b6197e07d2b02f06faeb2fe1830687b3cbce51639d45c9d 2272417 extdata/NBE63/snvs_NBE63_somatic_snvs_conf_8_to_10.vcf
0b621e2fb877120d7b1c7fe8f5e4c020d7dd9f4519eacde509abb7a166da3bac 78482 extdata/PURPLE/NB-S-599-T.purple.cnv.somatic.tsv
a4f56c59636f8403f85d4b4e267d1183ecd23cb6df2884dda7c8431d6e003a4f 611 extdata/Sample_template.txt
1a7d159dd763287dc4fa201291128f80443edf18c880bd2be2594b0844b8f8b6 8919 extdata/Sample_template.xlsx
ffd46b35bfe6ecaa6718d8b30e998b9cb830ef7daff2cc6c63c24a4b7c620fb1 163301 extdata/VAF_negative_example.png
6331300aaa20e2011189998ce7fe28ac34bb6b22caeeda681a88e9b5c4acc56d 187007 extdata/VAF_positive_example.png
9d5261891d034518a12caf43c37a443e295911de8df6557a7d07aba43005787d 58414 extdata/cancerhotspots_v2_GRCh37_adapted.tsv
7228fb71318ba2ea3cc5c695327eaa075e6d06d7a62d25814b5a53f1f1002101 66637 extdata/cancerhotspots_v2_GRCh38_adapted.tsv
b8ef1b8b5675d5d9330e9bb0f8b612781bded806f6bbfc028e49082711e4437a 21036 extdata/mutect.somatic.vcf.gz
e2f3c4ec2a72d370b54bbfb8e492cf1878214bb9eb38e7b24ef2e5962cf92a9a 994 extdata/mutect.somatic.vcf.gz.csi
982add5b064e4fcb97ced7bec64d868b0ef316502c69e192aaba76b01ec9cdfc 729 extdata/other.vcf
b7af7950512ee93d2812735653c9815f10b5639085271d0916af800539ff9c4e 203259 extdata/strelka2.somatic.snvs.vcf.gz
fb27a855630adac535398d82ecab5a86968aad98c4e118242d591f117cef977b 42930 extdata/strelka2.somatic.snvs.vcf.gz.csi
cc11f528955e5816a4b417f687eead895148ad724aaade3045b1918840e70f77 486 help/AnIndex
1a98cc812d7993073c42f2ec27aa6ae7fb0bf1404e0755687b35edf05ab95d22 62825 help/LACHESIS.rdb
bd0928b0ab6d23ff76403c3e8ae9ff6533078c456dee50dca4932fe18bab42d9 592 help/LACHESIS.rdx
66d9349a9b77107eb285ca250a43311f9b58e8869dc3a49b7508a98b0adf8ca0 269 help/aliases.rds
5015c12cad5b3a4d78d0164140412bbb804e9f21a0c50f8f6547a7c65c53cba1 56652 help/figures/LACHESIS_logo.svg
049f6d91d3b3a81b9668a13a3704557cc594ec1c1cf6e6345c9b60e7d662399b 379 help/paths.rds
72c031236243de8345708de5cd63853db842643f72b431ca973bd3062190778b 3883 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
0f6d715f30a4cfa67deb70089584f68b6f189e6e6bf9b0fc1a3e6b6e6b41b9d9 428 intdata/hg19.sizes
5bf5b5d3554490f47ab4e2bf21e3deae4fcb2e5d129227d5d49505c0b82f4d40 257 intdata/mm10.sizes
fa772b304507ca99d4706011bfe05a4f7cacc9d99dfb9359d4075e0b4b4994fa 2556 tinytest/test_nbImport.R
6dd512c8b6049eb807c43bd1f1da8a7258848831a01f9c1cff59a9d888b44c8d 1728 tinytest/test_readCNV.R
57493b0a138f0c906932a7f0a0e6980ec61caaa9479ef4305e311e66abe44fa4 2026 tinytest/test_readVCF.R
