Package: BioCor
Title: Functional Similarities
Version: 1.34.0
Authors@R: c(
    person("Lluís", "Revilla Sancho", , "lluis.revilla@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9747-2570")),
    person("Pau", "Sancho-Bru", role = "ths",
           comment = c(ORCID = "0000-0001-5569-9259")),
    person("Juan José Salvatella", "Lozano", role = "ths",
           comment = c(ORCID = "0000-0001-7613-3908"))
  )
Description: Calculates functional similarities based on the pathways
        described on KEGG and REACTOME or in gene sets. These
        similarities can be calculated for pathways or gene sets,
        genes, or clusters and combined with other similarities. They
        can be used to improve networks, gene selection, testing
        relationships...
License: MIT + file LICENSE
URL: https://bioconductor.org/packages/BioCor, https://biocor.llrs.dev
BugReports: https://github.com/llrs/BioCor/issues
Depends: R (>= 4.4)
Imports: BiocParallel, GSEABase, Matrix, methods
Suggests: airway, BiocStyle, boot, DESeq2, ggplot2 (>= 3.4.1),
        GOSemSim, Hmisc, knitr (>= 1.43), org.Hs.eg.db, reactome.db,
        rmarkdown, spelling, testthat (>= 3.1.5), WGCNA
VignetteBuilder: knitr
biocViews: StatisticalMethod, Clustering, GeneExpression, Network,
        Pathways, NetworkEnrichment, SystemsBiology
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/pak/sysreqs: libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:37:26 UTC
RemoteUrl: https://github.com/bioc/BioCor
RemoteRef: RELEASE_3_22
RemoteSha: 252c6ff3463c35afd9e34b77072b6980e1528610
NeedsCompilation: no
Packaged: 2026-02-23 08:45:17 UTC; root
Author: Lluís Revilla Sancho [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9747-2570>),
  Pau Sancho-Bru [ths] (ORCID: <https://orcid.org/0000-0001-5569-9259>),
  Juan José Salvatella Lozano [ths] (ORCID:
    <https://orcid.org/0000-0001-7613-3908>)
Maintainer: Lluís Revilla Sancho <lluis.revilla@gmail.com>
Built: R 4.5.2; ; 2026-02-23 08:48:21 UTC; windows
