# Generated by roxygen2: do not edit by hand

export(CrisprRun)
export(CrisprSet)
export(abifToFastq)
export(alleles)
export(alns)
export(barplotAlleleFreqs)
export(consensusSeqs)
export(countDeletions)
export(countIndels)
export(countInsertions)
export(findChimeras)
export(findSNVs)
export(getChimeras)
export(mutationEfficiency)
export(narrowAlignments)
export(plotAlignments)
export(plotChimeras)
export(plotFreqHeatmap)
export(plotVariants)
export(readsByPCRPrimer)
export(readsToTarget)
export(readsToTargets)
export(refFromAlns)
export(variantCounts)
exportClasses(CrisprRun)
exportClasses(CrisprSet)
exportMethods(indelPercent)
exportMethods(mergeCrisprSets)
import(BiocParallel)
import(Biostrings)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(Rsamtools)
import(S4Vectors)
import(ggplot2)
import(methods)
importFrom(AnnotationDbi,select)
importFrom(GenomeInfoDb,seqlengths)
importFrom(grDevices,colorRampPalette)
importFrom(grid,gpar)
importFrom(grid,grid.rect)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(reshape2,melt)
importFrom(utils,modifyList)
