Package: CrispRVariants
Type: Package
Title: Tools for counting and visualising mutations in a target
        location
Version: 1.38.0
Authors@R: c(person(given = "Helen", family = "Lindsay", role = c("aut", "cre"), email =
          "helen.lindsay@chuv.ch"))
Author: Helen Lindsay [aut, cre]
Description: CrispRVariants provides tools for analysing the results of
        a CRISPR-Cas9 mutagenesis sequencing experiment, or other
        sequencing experiments where variants within a given region are
        of interest. These tools allow users to localize variant allele
        combinations with respect to any genomic location (e.g. the
        Cas9 cut site), plot allele combinations and calculate mutation
        rates with flexible filtering of unrelated variants.
biocViews: ImmunoOncology, CRISPR, GenomicVariation, VariantDetection,
        GeneticVariability, DataRepresentation, Visualization,
        Sequencing
Depends: R (>= 4.3.0), ggplot2 (>= 2.2.0)
Encoding: UTF-8
License: GPL-2
Imports: AnnotationDbi, BiocParallel, Biostrings, methods,
        GenomeInfoDb, GenomicAlignments, GenomicRanges, grDevices,
        grid, gridExtra, IRanges, reshape2, Rsamtools, S4Vectors (>=
        0.9.38), utils
Suggests: BiocStyle, GenomicFeatures, knitr, rmarkdown, readxl,
        rtracklayer, sangerseqR, testthat, VariantAnnotation
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 7.2.3
Config/pak/sysreqs: libbz2-dev libicu-dev liblzma-dev libpng-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:29:17 UTC
RemoteUrl: https://github.com/bioc/CrispRVariants
RemoteRef: RELEASE_3_22
RemoteSha: d78780f35ece08021efb33b3d1919c889c2dba7f
Packaged: 2026-03-03 08:58:19 UTC; root
Maintainer: Helen Lindsay <helen.lindsay@chuv.ch>
Built: R 4.5.2; ; 2026-03-03 09:00:31 UTC; windows
