Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.52.0
Date: 2021-11-22
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Daniel Lai <dalai@bccrc.ca>
Import: data.table
Depends: R (>= 2.10.0), data.table (>= 1.11.8)
Description: Corrects GC and mappability biases for readcounts (i.e.
        coverage) in non-overlapping windows of fixed length for single
        whole genome samples, yielding a rough estimate of copy number
        for furthur analysis.  Designed for rapid correction of high
        coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariation, Microarray
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:12:28 UTC
RemoteUrl: https://github.com/bioc/HMMcopy
RemoteRef: RELEASE_3_22
RemoteSha: 6e596f0412f1080b0b729d2596c502a5cf1cebba
NeedsCompilation: yes
Packaged: 2026-03-04 07:54:23 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2026-03-04 07:55:26 UTC; windows
Archs: x64
