Package: HiCaptuRe
Type: Package
Title: HiCaptuRe: Manipulating and integrating Capture Hi-C data
Version: 1.0.0
Authors@R: c(person("Laureano Tomas-Daza", 
                    role = c("aut", "cre"),
                    email = "lauretomas@gmail.com",
                    comment = c(ORCID = "0000-0002-6127-1694")))
URL: https://github.com/LaureTomas/HiCaptuRe
Description: Capture Hi-C is a set of techniques that enable the
        detection of genomic interactions involving regions of
        interest, known as baits. By focusing on selected loci, these
        approaches reduce sequencing costs while maintaining high
        resolution at the level of restriction fragments. HiCaptuRe
        provides tools to import, annotate, manipulate, and export
        Capture Hi-C data. The package accounts for the specific
        structure of bait–otherEnd interactions, facilitates
        integration with other omics datasets, and enables comparison
        across samples and conditions.
BugReports: https://github.com/LaureTomas/HiCaptuRe/issues
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.4.0)
Imports: Biostrings, BSgenome, cli, data.table, dplyr, GenomeInfoDb,
        GenomicInteractions, GenomicRanges, InteractionSet, ggplot2,
        ggpubr, ggVennDiagram, gplots, igraph, IRanges, memoise,
        methods, S4Vectors, stringr, tibble, tidyr, UpSetR, utils
RoxygenNote: 7.3.2
Suggests: BSgenome.Hsapiens.NCBI.GRCh38, knitr, rmarkdown, DT,
        testthat, BiocStyle, kableExtra
biocViews: Epigenetics, HiC, Sequencing, DataImport, Software
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:37:26 UTC
RemoteUrl: https://github.com/bioc/HiCaptuRe
RemoteRef: RELEASE_3_22
RemoteSha: 0a37211d3e8cb4650667141d7182e1596d8a5fd7
NeedsCompilation: no
Packaged: 2026-02-20 05:55:50 UTC; root
Author: Laureano Tomas-Daza [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6127-1694>)
Maintainer: Laureano Tomas-Daza <lauretomas@gmail.com>
Built: R 4.5.2; ; 2026-02-20 05:59:20 UTC; windows
