Package: HuBMAPR
Title: Interface to 'HuBMAP'
Version: 1.4.0
Authors@R: 
    c(person(
        given = "Christine",
        family = "Hou",
        role = c("aut", "cre"),
        email = "chris2018hou@gmail.com",
        comment = c(ORCID = "0009-0001-5350-0629")
    ),
    person(
        given = "Martin",
        family = "Morgan",
        role = "aut",
        email = "mtmorgan.bioc@gmail.com",
        comment = c(ORCID = "0000-0002-5874-8148")
    ),
    person(
        given = "Federico",
        family = "Marini",
        role = "aut",
        comment = c(ORCID = "0000-0003-3252-7758")
    )
    )
Description: 'HuBMAP' provides an open, global bio-molecular atlas of
        the human body at the cellular level. The `datasets()`,
        `samples()`, `donors()`, `publications()`, and `collections()`
        functions retrieves the information for each of these entity
        types. `*_details()` are available for individual entries of
        each entity type. `*_derived()` are available for retrieving
        derived datasets or samples for individual entries of each
        entity type. Data files can be accessed using
        `bulk_data_transfer()`.
License: Artistic-2.0
Depends: R (>= 4.4.0)
Imports: httr2, dplyr, tidyr, tibble, rjsoncons, utils, stringr,
        whisker, purrr, rlang
Collate: query.R datasets.R samples.R donors.R utilities.R
        publications.R publication_information.R collections.R
        collection_information.R provenance.R files.R organ.R
        template.R utils-globals.R
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Suggests: testthat (>= 3.0.0), knitr, ggplot2, rmarkdown, BiocStyle,
        pryr
VignetteBuilder: knitr
biocViews: Software, SingleCell, DataImport, ThirdPartyClient, Spatial,
        Infrastructure
URL: https://christinehou11.github.io/HuBMAPR/,
        https://github.com/christinehou11/HuBMAPR
BugReports: https://github.com/christinehou11/HuBMAPR/issues
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:33:01 UTC
RemoteUrl: https://github.com/bioc/HuBMAPR
RemoteRef: RELEASE_3_22
RemoteSha: e815208e996ea8466efd5a5a39c406f97a77a726
NeedsCompilation: no
Packaged: 2026-02-23 08:31:54 UTC; root
Author: Christine Hou [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-5350-0629>),
  Martin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Christine Hou <chris2018hou@gmail.com>
Built: R 4.5.2; ; 2026-02-23 08:33:27 UTC; windows
