Package: IRanges
Title: Foundation of integer range manipulation in Bioconductor
Description: Provides efficient low-level and highly reusable S4
        classes for storing, manipulating and aggregating over
        annotated ranges of integers. Implements an algebra of range
        operations, including efficient algorithms for finding overlaps
        and nearest neighbors. Defines efficient list-like classes for
        storing, transforming and aggregating large grouped data, i.e.,
        collections of atomic vectors and DataFrames.
biocViews: Infrastructure, DataRepresentation
URL: https://bioconductor.org/packages/IRanges
BugReports: https://github.com/Bioconductor/IRanges/issues
Version: 2.44.0
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Patrick", "Aboyoun", role="aut"),
	person("Michael", "Lawrence", role="aut"))
Depends: R (>= 4.0.0), methods, utils, stats, BiocGenerics (>= 0.53.2),
        S4Vectors (>= 0.47.6)
Imports: stats4
LinkingTo: S4Vectors
Suggests: XVector, GenomicRanges, Rsamtools, GenomicAlignments,
        GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
        RUnit, BiocStyle
Collate: thread-control.R range-squeezers.R Vector-class-leftovers.R
        DataFrameList-class.R DataFrameList-utils.R AtomicList-class.R
        AtomicList-utils.R Ranges-and-RangesList-classes.R
        IPosRanges-class.R IPosRanges-comparison.R
        IntegerRangesList-class.R IRanges-class.R IRanges-constructor.R
        makeIRangesFromDataFrame.R IRanges-utils.R
        Rle-class-leftovers.R IPos-class.R subsetting-utils.R
        Grouping-class.R Views-class.R RleViews-class.R
        RleViews-summarization.R extractList.R seqapply.R multisplit.R
        SimpleGrouping-class.R IRangesList-class.R IPosList-class.R
        ViewsList-class.R RleViewsList-class.R RleViewsList-utils.R
        RangedSelection-class.R MaskCollection-class.R read.Mask.R
        CompressedList-class.R CompressedList-comparison.R
        CompressedHitsList-class.R CompressedDataFrameList-class.R
        CompressedAtomicList-class.R
        CompressedAtomicList-summarization.R CompressedGrouping-class.R
        CompressedRangesList-class.R Hits-class-leftovers.R
        NCList-class.R findOverlaps-methods.R windows-methods.R
        intra-range-methods.R inter-range-methods.R reverse-methods.R
        coverage-methods.R cvg-methods.R slice-methods.R
        setops-methods.R nearest-methods.R cbind-Rle-methods.R
        tile-methods.R extractListFragments.R zzz.R
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 17:25:59 UTC
RemoteUrl: https://github.com/bioc/IRanges
RemoteRef: RELEASE_3_22
RemoteSha: 964a2904e15d5352da6bcb1e0f55fcf62a09ce59
NeedsCompilation: yes
Packaged: 2026-03-04 08:09:13 UTC; root
Author: Hervé Pagès [aut, cre],
  Patrick Aboyoun [aut],
  Michael Lawrence [aut]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
Built: R 4.5.2; x86_64-w64-mingw32; 2026-03-04 08:12:19 UTC; windows
Archs: x64
