Package: IntramiRExploreR
Title: Predicting Targets for Drosophila Intragenic miRNAs
Version: 1.32.0
Author: Surajit Bhattacharya and Daniel Cox
Maintainer: Surajit Bhattacharya <sbhattach2@childrensnational.org>
Description: Intra-miR-ExploreR, an integrative miRNA target prediction
        bioinformatics tool, identifies targets combining expression
        and biophysical interactions of a given microRNA (miR). Using
        the tool, we have identified targets for 92 intragenic miRs in
        D. melanogaster, using available microarray expression data,
        from Affymetrix 1 and Affymetrix2 microarray array platforms,
        providing a global perspective of intragenic miR targets in
        Drosophila. Predicted targets are grouped according to
        biological functions using the DAVID Gene Ontology tool and are
        ranked based on a biologically relevant scoring system,
        enabling the user to identify functionally relevant targets for
        a given miR.
Depends: R (>= 3.4)
Imports: igraph (>= 1.0.1), FGNet (>= 3.0.7), knitr (>= 1.12.3), stats,
        utils, grDevices, graphics
Suggests: gProfileR, topGO, org.Dm.eg.db, rmarkdown, testthat
VignetteBuilder: knitr
License: GPL-2
biocViews: Software, Microarray, GeneTarget, StatisticalMethod,
        GeneExpression, GenePrediction
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
URL: https://github.com/VilainLab/IntramiRExploreR
BugReports: https://github.com/VilainLab/IntramiRExploreR
Config/pak/sysreqs: libglpk-dev libicu-dev libpng-dev libxml2-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:12:17 UTC
RemoteUrl: https://github.com/bioc/IntramiRExploreR
RemoteRef: RELEASE_3_22
RemoteSha: f12ae09924ad80cd9d0e130b20d81ab1f391e25e
NeedsCompilation: no
Packaged: 2026-02-24 09:14:18 UTC; root
Built: R 4.5.2; ; 2026-02-24 09:16:04 UTC; windows
