# Analysis of patient-derived xenograft (PDX) data

## Documentation for package ‘Xeva’ version 1.26.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

ABC | area between curves Computes the area between two time-volume curves.
addExperimentalDesign | Add a new experimental design
addExperimentalDesign-method | Add a new experimental design
angle | compute angle Computes the angle between two time-volume curves.
AUC | area under the curve 'AUC' Returns area under the curve
batchInfo | Get batch information
batchInfo-method | Get batch information
brca | PDXE breast cancer dataset
createXevaSet | XevaSet constructor
dosePlot | plot dose data
downloadXevaSet | Download a XevaSet object or table of available XevaSet objects
drugInform | Get drug information Get the drug information slot from a XevaSet object.
drugInform-method | Get drug information Get the drug information slot from a XevaSet object.
drugSensitivitySig | get drug sensitivity values
getExperiment | Get PDX experiment data
getExperiment-method | Get PDX experiment data
getMolecularProfiles | Get molecular profiles from a XevaSet object
lmm | linear mixed model
modelInfo | modelInfo Generic Generic for modelInfo method
modelInfo-method | modelInfo Generic Generic for modelInfo method
mRECIST | Computes the mRECIST
PDXMI | PDX-MI data
plotBatch | Plot batch data
plotmRECIST | To plot mRECIST values
plotPDX | Plot batch data
print.batchResponse | Print the batch response
print.modelResponse | Print the model response
print.pdxBatch | Print the pdx batch
repdx | Example PDX dataset
response | compute PDX response
selectModelIds | To select model IDs based on drug name and/or tissue type.
selectModelIds-method | To select model IDs based on drug name and/or tissue type.
sensitivity | Get sensitivity for an Xeva object
setResponse | set PDX response
slope | Computes slope
subsetXeva | Subset Xeva object.
summarizeMolecularProfiles | Summarize molecular profiles
summarizeResponse | Summarize Response of PDXs
TGI | tumor growth inhibition (TGI) Computes the tumor growth inhibition (TGI) between two time-volume curves
waterfall | waterfall plot Creates waterfall plot for a given drug.