Package: alevinQC
Type: Package
Title: Generate QC Reports For Alevin Output
Version: 1.26.0
Date: 2025-07-17
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
                    email = "charlottesoneson@gmail.com", 
                    comment = c(ORCID = "0000-0003-3833-2169")),
    person("Avi", "Srivastava", role = "aut"),
    person("Rob", "Patro", role = "aut"),
    person("Dongze", "He", role = "aut"))
Description: Generate QC reports summarizing the output from an alevin,
        alevin-fry, or simpleaf run. Reports can be generated as html
        or pdf files, or as shiny applications.
Encoding: UTF-8
SystemRequirements: C++11
Depends: R (>= 4.0)
Imports: rmarkdown (>= 2.5), tools, methods, ggplot2 (>= 3.4.0),
        GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils,
        tximport (>= 1.17.4), cowplot, rlang, Rcpp
RoxygenNote: 7.3.2
Suggests: knitr, BiocStyle, testthat (>= 3.0.0), BiocManager
VignetteBuilder: knitr
biocViews: QualityControl, SingleCell
URL: https://github.com/csoneson/alevinQC
BugReports: https://github.com/csoneson/alevinQC/issues
License: MIT + file LICENSE
Config/testthat/edition: 3
LinkingTo: Rcpp
Config/pak/sysreqs: make libicu-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:50:08 UTC
RemoteUrl: https://github.com/bioc/alevinQC
RemoteRef: RELEASE_3_22
RemoteSha: e9f801eb80f97f3824cb2841fc0b08414789d879
NeedsCompilation: yes
Packaged: 2026-02-27 08:41:56 UTC; root
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Avi Srivastava [aut],
  Rob Patro [aut],
  Dongze He [aut]
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>
Built: R 4.5.2; x86_64-w64-mingw32; 2026-02-27 08:43:45 UTC; windows
Archs: x64
