Package: anansi
Type: Package
Title: Annotation-Based Analysis of Specific Interactions
Version: 1.0.0
Authors@R: c(
   person("Thomaz", "Bastiaanssen", email = "thomazbastiaanssen@gmail.com", 
       role = c("aut", "cre"), comment = c(ORCID = "0000-0001-6891-734X")), 
   person("Thomas", "Quinn", email = "contacttomquinn@gmail.com", 
       role = c("aut"), comment = c(ORCID = "0000-0003-0286-6329")),
   person("Giulio", "Benedetti", email = "giulio.benedetti@utu.fi", 
       role = c("aut"), comment = c(ORCID = "0000-0002-8732-7692")), 
   person("Tuomas", "Borman", email = "tuomas.v.borman@utu.fi", 
       role = c("aut"), comment = c(ORCID = "0000-0002-8563-8884")), 
   person("Leo", "Lahti", email = "leo.lahti@utu.fi",
       role = c("aut"), comment = c(ORCID = "0000-0001-5537-637X"))    
   )
Description: Studies including both microbiome and metabolomics data
        are becoming more common. Often, it would be helpful to
        integrate both datasets in order to see if they corroborate
        each others patterns. All vs all association is imprecise and
        likely to yield spurious associations. This package takes a
        knowledge-based approach to constrain association search space,
        only considering metabolite-function pairs that have been
        recorded in a pathway database. This package also provides a
        framework to assess differential association.
Depends: R (>= 4.4.0)
Imports: S7, stats, methods, igraph, Matrix, forcats, S4Vectors,
        SummarizedExperiment, MultiAssayExperiment,
        SingleCellExperiment, TreeSummarizedExperiment, rlang, ggplot2,
        ggforce, patchwork, ggraph, tidygraph
Suggests: BiocStyle, dplyr, tidyr, graph, mia, KEGGREST, testthat (>=
        3.0.0), knitr, rmarkdown
License: GPL-3
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.3
Config/testthat/edition: 3
biocViews: Microbiome, Metabolomics, Regression, Pathways, KEGG
URL: https://github.com/thomazbastiaanssen/anansi,
        https://thomazbastiaanssen.github.io/anansi
BugReports: https://github.com/thomazbastiaanssen/anansi/issues
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        make libicu-dev libxml2-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:38:37 UTC
RemoteUrl: https://github.com/bioc/anansi
RemoteRef: RELEASE_3_22
RemoteSha: 78b4ccb4b71291b391d94ebd523ee16cd9dbacc1
NeedsCompilation: no
Packaged: 2026-02-23 08:34:13 UTC; root
Author: Thomaz Bastiaanssen [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6891-734X>),
  Thomas Quinn [aut] (ORCID: <https://orcid.org/0000-0003-0286-6329>),
  Giulio Benedetti [aut] (ORCID: <https://orcid.org/0000-0002-8732-7692>),
  Tuomas Borman [aut] (ORCID: <https://orcid.org/0000-0002-8563-8884>),
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
Maintainer: Thomaz Bastiaanssen <thomazbastiaanssen@gmail.com>
Built: R 4.5.2; ; 2026-02-23 08:36:20 UTC; windows
