Package: bandle
Type: Package
Title: An R package for the Bayesian analysis of differential
        subcellular localisation experiments
Version: 1.14.0
Authors@R: c(person(family = "Crook", given = "Oliver M.",
		                email = "oliver.crook@stats.ox.ac.uk",
		                comment = c(ORCID = "0000-0001-5669-8506"),
		                role = c("aut", "cre")),
		         person(family = "Breckels", given = "Lisa",
		                email = "lms79@cam.ac.uk",
		                comment = c(ORCID = "0000-0001-8918-7171"),
                                role = c("aut")))
Description: The Bandle package enables the analysis and visualisation
        of differential localisation experiments using
        mass-spectrometry data. Experimental methods supported include
        dynamic LOPIT-DC, hyperLOPIT, Dynamic Organellar Maps, Dynamic
        PCP. It provides Bioconductor infrastructure to analyse these
        data.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.1), S4Vectors, Biobase, MSnbase, pRoloc
Imports: Rcpp (>= 1.0.4.6), pRolocdata, lbfgs, ggplot2, dplyr, plyr,
        knitr, methods, BiocParallel, robustbase, BiocStyle,
        ggalluvial, ggrepel, tidyr, circlize, graphics, stats, utils,
        grDevices, rlang, RColorBrewer, gtools, gridExtra, coda (>=
        0.19-4)
Suggests: testthat, interp, fields, pheatmap, viridis, rmarkdown,
        spelling
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo, BH
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.2
biocViews: Bayesian, Classification, Clustering, ImmunoOncology,
        QualityControl,DataImport, Proteomics, MassSpectrometry
BugReports: https://github.com/ococrook/bandle/issues
URL: http://github.com/ococrook/bandle
Language: en-US
Config/pak/sysreqs: libglpk-dev make libicu-dev libpng-dev libxml2-dev
        libnetcdf-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:16:12 UTC
RemoteUrl: https://github.com/bioc/bandle
RemoteRef: RELEASE_3_22
RemoteSha: 9a9a1bc932881094c7b7fe8fea5336b317f0ceeb
NeedsCompilation: yes
Packaged: 2026-01-24 20:58:01 UTC; root
Author: Oliver M. Crook [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5669-8506>),
  Lisa Breckels [aut] (ORCID: <https://orcid.org/0000-0001-8918-7171>)
Maintainer: Oliver M. Crook <oliver.crook@stats.ox.ac.uk>
Built: R 4.5.2; x86_64-w64-mingw32; 2026-01-24 21:01:45 UTC; windows
Archs: x64
