Package: barbieQ
Type: Package
Title: Analyze Barcode Data from Clonal Tracking Experiments
Version: 1.2.0
Description: The barbieQ package provides a series of robust
        statistical tools for analysing barcode count data generated
        from cell clonal tracking (i.e., lineage tracing) experiments.
        In these experiments, an initial cell and its offspring
        collectively form a clone (i.e., lineage). A unique barcode
        sequence, incorporated into the DNA of the inital cell, is
        inherited within the clone. This one-to-one mapping of barcodes
        to clones enables clonal tracking of their behaviors. By
        counting barcodes, researchers can quantify the population
        abundance of individual clones under specific experimental
        perturbations. barbieQ supports barcode count data
        preprocessing, statistical testing, and visualization.
Authors@R: 
  c(person(given = "Liyang", 
           family = "Fei",
           role = c("aut", "cre"),
           email = "liyang.fei@petermac.org",
           comment = c(ORCID = "0000-0002-3293-2094"))
    )
License: GPL-3
LazyData: FALSE
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
Imports: magrittr, tidyr, dplyr, grid, circlize, ComplexHeatmap,
        ggplot2, logistf, limma, stats, igraph, utils, data.table,
        S4Vectors, SummarizedExperiment
biocViews: Sequencing, Software, Regression, Preprocessing,
        Visualization
BugReports: https://github.com/Oshlack/barbieQ
URL: https://github.com/Oshlack/barbieQ/issues
RoxygenNote: 7.3.2
Config/testthat/edition: 3
Depends: R (>= 4.4)
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libxml2-dev perl libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:36:03 UTC
RemoteUrl: https://github.com/bioc/barbieQ
RemoteRef: RELEASE_3_22
RemoteSha: 713137bd3ce18e42796536883ed92c61496398a2
NeedsCompilation: no
Packaged: 2026-03-05 08:02:27 UTC; root
Author: Liyang Fei [aut, cre] (ORCID: <https://orcid.org/0000-0002-3293-2094>)
Maintainer: Liyang Fei <liyang.fei@petermac.org>
Built: R 4.5.2; ; 2026-03-05 08:04:23 UTC; windows
