Package: coseq
Type: Package
Title: Co-Expression Analysis of Sequencing Data
Version: 1.34.0
Date: 2021-07-21
Authors@R: c(
  person(given="Andrea", 
         family="Rau", 
         email="andrea.rau@inrae.fr", 
         role=c("cre", "aut"), 
         comment = c(ORCID = "0000-0001-6469-488X")),
  person(given="Cathy",
         family="Maugis-Rabusseau",
         role="ctb"),
  person(given="Antoine",
         family="Godichon-Baggioni",
         role="ctb"))
Depends: R (>= 4.0.0), SummarizedExperiment, S4Vectors
Imports: edgeR, DESeq2, capushe, Rmixmod, e1071, BiocParallel, ggplot2,
        scales, HTSFilter, corrplot, HTSCluster, grDevices, graphics,
        stats, methods, compositions, mvtnorm
Suggests: Biobase, knitr, rmarkdown, testthat, BiocStyle
Description: Co-expression analysis for expression profiles arising
        from high-throughput sequencing data. Feature (e.g., gene)
        profiles are clustered using adapted transformations and
        mixture models or a K-means algorithm, and model selection
        criteria (to choose an appropriate number of clusters) are
        provided.
biocViews: GeneExpression, RNASeq, Sequencing, Software, ImmunoOncology
License: GPL-3
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: make zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:36:16 UTC
RemoteUrl: https://github.com/bioc/coseq
RemoteRef: RELEASE_3_22
RemoteSha: c25dfae71566cdba7b507a592a8cd51490b879c6
NeedsCompilation: no
Packaged: 2026-03-05 07:06:51 UTC; root
Author: Andrea Rau [cre, aut] (ORCID: <https://orcid.org/0000-0001-6469-488X>),
  Cathy Maugis-Rabusseau [ctb],
  Antoine Godichon-Baggioni [ctb]
Maintainer: Andrea Rau <andrea.rau@inrae.fr>
Built: R 4.5.2; ; 2026-03-05 07:08:41 UTC; windows
