Package: dcanr
Title: Differential co-expression/association network analysis
Version: 1.26.0
Authors@R: person("Dharmesh", "Bhuva", "D.", email = "bhuva.d@wehi.edu.au", role = c("aut", "cre"), comment = c(ORCID = '0000-0002-6398-9157'))
Description: This package implements methods and an evaluation
        framework to infer differential co-expression/association
        networks. Various methods are implemented and can be evaluated
        using simulated datasets. Inference of differential
        co-expression networks can allow identification of networks
        that are altered between two conditions (e.g., health and
        disease).
biocViews: NetworkInference, GraphAndNetwork, DifferentialExpression,
        Network
Depends: R (>= 3.6.0)
License: GPL-3
Encoding: UTF-8
LazyData: false
Imports: igraph, foreach, plyr, stringr, reshape2, methods, Matrix,
        graphics, stats, RColorBrewer, circlize, doRNG
Suggests: EBcoexpress, testthat, EBarrays, GeneNet, mclust, minqa,
        SummarizedExperiment, Biobase, knitr, rmarkdown, BiocStyle,
        edgeR
RoxygenNote: 7.2.0
Collate: 'LDGM.R' 'dcZscore.R' 'dcanr.R' 'statistical_tests.R'
        'performance_metrics.R' 'multtest_adjust.R'
        'evaluation_functions.R' 'inference_methods.R'
        'inference_methods_generic.R' 'network_inference.R' 'sim102.R'
        'simulation_accessors.R' 'simulation_plot.R'
VignetteBuilder: knitr
Enhances: parallel, doSNOW, doParallel
URL: https://davislaboratory.github.io/dcanr/,
        https://github.com/DavisLaboratory/dcanr
BugReports: https://github.com/DavisLaboratory/dcanr/issues
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:51:48 UTC
RemoteUrl: https://github.com/bioc/dcanr
RemoteRef: RELEASE_3_22
RemoteSha: 848b497bb17f25e637f6358924c5b970f456b827
NeedsCompilation: no
Packaged: 2026-02-23 09:05:46 UTC; root
Author: Dharmesh D. Bhuva [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6398-9157>)
Maintainer: Dharmesh D. Bhuva <bhuva.d@wehi.edu.au>
Built: R 4.5.2; ; 2026-02-23 09:06:59 UTC; windows
