Package: gcapc
Title: GC Aware Peak Caller
Version: 1.34.0
Author: Mingxiang Teng and Rafael A. Irizarry
Maintainer: Mingxiang Teng <tengmx@gmail.com>
Description: Peak calling for ChIP-seq data with consideration of
        potential GC bias in sequencing reads. GC bias is first
        estimated with generalized linear mixture models using
        effective GC strategy, then applied into peak significance
        estimation.
Depends: R (>= 3.4)
Imports: BiocGenerics, Seqinfo, S4Vectors, IRanges, Biostrings,
        BSgenome, GenomicRanges, Rsamtools, GenomicAlignments,
        matrixStats, MASS, splines, grDevices, graphics, stats, methods
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Mmusculus.UCSC.mm10
URL: https://github.com/tengmx/gcapc
License: GPL-3
biocViews: Sequencing, ChIPSeq, BatchEffect, PeakDetection
RoxygenNote: 6.0.1
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:35:52 UTC
RemoteUrl: https://github.com/bioc/gcapc
RemoteRef: RELEASE_3_22
RemoteSha: 689a02eb220967df7d0c9772cf53fcebfaffb79f
NeedsCompilation: no
Packaged: 2026-01-30 20:52:03 UTC; root
Built: R 4.5.2; ; 2026-01-30 20:54:59 UTC; windows
