Package: gmoviz
Type: Package
Title: Seamless visualization of complex genomic variations in GMOs and
        edited cell lines
Version: 1.22.0
Authors@R: c(
    person("Kathleen", "Zeglinski", email = "kathleen.zeglinski@csl.com.au", 
    role = c("cre", "aut")), 
    person("Arthur", "Hsu", email = "arthur.hsu@csl.com.au", role = "aut"), 
    person("Monther", "Alhamdoosh", email = "monther.alhamdoosh@csl.com.au", 
    role = "aut", comment = c(ORCID = "0000-0002-2411-1325")), 
    person("Constantinos", "Koutsakis", 
    email = "Constantinos.Koutsakis@csl.com.au", role = "aut"))
Description: Genetically modified organisms (GMOs) and cell lines are
        widely used models in all kinds of biological research. As part
        of characterising these models, DNA sequencing technology and
        bioinformatics analyses are used systematically to study their
        genomes. Therefore, large volumes of data are generated and
        various algorithms are applied to analyse this data, which
        introduces a challenge on representing all findings in an
        informative and concise manner. `gmoviz` provides users with an
        easy way to visualise and facilitate the explanation of complex
        genomic editing events on a larger, biologically-relevant
        scale.
biocViews: Visualization, Sequencing, GeneticVariability,
        GenomicVariation, Coverage
Depends: circlize, GenomicRanges, graphics, R (>= 4.0)
Imports: grid, gridBase, Rsamtools, ComplexHeatmap, BiocGenerics,
        Biostrings, Seqinfo, methods, GenomicAlignments,
        GenomicFeatures, IRanges, rtracklayer, pracma, colorspace,
        S4Vectors
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
Suggests: testthat, knitr, rmarkdown, pasillaBamSubset, BiocStyle,
        BiocManager, GenomeInfoDb
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev perl xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:57:48 UTC
RemoteUrl: https://github.com/bioc/gmoviz
RemoteRef: RELEASE_3_22
RemoteSha: 64c24549e3368bd9581baade54afdbd8e30a21d5
NeedsCompilation: no
Packaged: 2026-03-11 08:03:36 UTC; root
Author: Kathleen Zeglinski [cre, aut],
  Arthur Hsu [aut],
  Monther Alhamdoosh [aut] (ORCID:
    <https://orcid.org/0000-0002-2411-1325>),
  Constantinos Koutsakis [aut]
Maintainer: Kathleen Zeglinski <kathleen.zeglinski@csl.com.au>
Built: R 4.5.2; ; 2026-03-11 08:05:42 UTC; windows
