Package: metabCombiner
Version: 1.20.0
Date: 2024-05-23
Title: Method for Combining LC-MS Metabolomics Feature Measurements
Authors@R: c(
	   person("Hani", "Habra", email = "hhabra1@gmail.com",role = c("aut","cre")),
	   person("Alla", "Karnovsky", email = "akarnovs@med.umich.edu", role = "ths"))
License: GPL-3
Description: This package aligns LC-HRMS metabolomics datasets acquired
        from biologically similar specimens analyzed under similar, but
        not necessarily identical, conditions. Peak-picked and simply
        aligned metabolomics feature tables (consisting of m/z, rt, and
        per-sample abundance measurements, plus optional identifiers &
        adduct annotations) are accepted as input. The package outputs
        a combined table of feature pair alignments, organized into
        groups of similar m/z, and ranked by a similarity score. Input
        tables are assumed to be acquired using similar (but not
        necessarily identical) analytical methods.
Depends: R (>= 4.0)
Imports: dplyr (>= 1.0), methods, mgcv, caret, S4Vectors, stats, utils,
        rlang, graphics, matrixStats, tidyr
Suggests: knitr, rmarkdown, testthat, BiocStyle
BugReports: https://www.github.com/hhabra/metabCombiner/issues
NeedsCompilation: yes
RoxygenNote: 7.1.1
Encoding: UTF-8
Collate: 'adjustData.R' 'batchCombine.R' 'calcScores.R' 'check_pars.R'
        'classes.R' 'combinerCheck.R' 'compare_strings.R' 'data.R'
        'detectFields.R' 'evaluateParams.R' 'fit_model.R' 'form.R'
        'generics.R' 'labelRows.R' 'metabCombine.R' 'metabCombiner.R'
        'metabCombiner_package_doc.R' 'metabData.R'
        'methods-featdata.R' 'methods-metabCombiner.R'
        'methods-metabData.R' 'mzGroup.R' 'params.R' 'plot_fit.R'
        'resolveRows.R' 'selectAnchors.R' 'updateTables.R'
        'write2file.R' 'zzz.R'
VignetteBuilder: knitr
biocViews: Software, MassSpectrometry, Metabolomics
LazyData: false
Config/pak/sysreqs: libicu-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:03:41 UTC
RemoteUrl: https://github.com/bioc/metabCombiner
RemoteRef: RELEASE_3_22
RemoteSha: 32c5536b9565794b11f31557760577acf8e9e86d
Packaged: 2026-03-15 09:31:43 UTC; root
Author: Hani Habra [aut, cre],
  Alla Karnovsky [ths]
Maintainer: Hani Habra <hhabra1@gmail.com>
Built: R 4.5.3; x86_64-w64-mingw32; 2026-03-15 09:33:12 UTC; windows
Archs: x64
