# Generated by roxygen2: do not edit by hand

export(cor_binary)
export(diff_module)
export(miRSM)
export(miRSM_SS)
export(module_CEA)
export(module_Coexpress)
export(module_FA)
export(module_GFA)
export(module_NMF)
export(module_ProNet)
export(module_Validate)
export(module_WGCNA)
export(module_biclust)
export(module_clust)
export(module_group_sim)
export(module_igraph)
export(module_miRdistribute)
export(module_miRsponge)
export(module_miRtarget)
export(share_miRs)
import(RColorBrewer)
import(SummarizedExperiment)
import(grid)
import(igraph)
import(methods)
import(org.Hs.eg.db)
importFrom(BiBitR,MaxBC)
importFrom(BiBitR,bibit)
importFrom(BicARE,FLOC)
importFrom(BicARE,bicluster)
importFrom(Biobase,ExpressionSet)
importFrom(DOSE,enrichDGN)
importFrom(DOSE,enrichDO)
importFrom(DOSE,enrichNCG)
importFrom(GFA,getDefaultOpts)
importFrom(GFA,gfa)
importFrom(GFA,normalizeData)
importFrom(GSEABase,GeneSet)
importFrom(GSEABase,GeneSetCollection)
importFrom(GSEABase,geneIds)
importFrom(MCL,mcl)
importFrom(MatrixCorrelation,Coxhead)
importFrom(MatrixCorrelation,GCD)
importFrom(MatrixCorrelation,RV)
importFrom(MatrixCorrelation,RV2)
importFrom(MatrixCorrelation,RVadjGhaziri)
importFrom(MatrixCorrelation,RVadjMaye)
importFrom(MatrixCorrelation,Rozeboom)
importFrom(MatrixCorrelation,SMI)
importFrom(NMF,nmf)
importFrom(NMF,nneg)
importFrom(NMF,predict)
importFrom(PMA,CCA)
importFrom(PMA,CCA.permute)
importFrom(Rcpp,evalCpp)
importFrom(ReactomePA,enrichPathway)
importFrom(SOMbrero,trainSOM)
importFrom(WGCNA,TOMdist)
importFrom(WGCNA,adjacency)
importFrom(WGCNA,cor)
importFrom(WGCNA,corAndPvalue)
importFrom(WGCNA,corPvalueFisher)
importFrom(WGCNA,pickSoftThreshold)
importFrom(WGCNA,standardColors)
importFrom(biclust,BCBimax)
importFrom(biclust,BCCC)
importFrom(biclust,BCPlaid)
importFrom(biclust,BCQuest)
importFrom(biclust,BCSpectral)
importFrom(biclust,BCXmotifs)
importFrom(biclust,biclust)
importFrom(biclust,biclusternumber)
importFrom(biclust,binarize)
importFrom(biclust,discretize)
importFrom(clusterProfiler,bitr)
importFrom(clusterProfiler,compareCluster)
importFrom(clusterProfiler,enrichGO)
importFrom(clusterProfiler,enrichKEGG)
importFrom(dbscan,dbscan)
importFrom(dbscan,optics)
importFrom(dynamicTreeCut,cutreeDynamic)
importFrom(energy,dcor)
importFrom(energy,pdcor)
importFrom(fabia,extractBic)
importFrom(fabia,fabia)
importFrom(fabia,fabiap)
importFrom(fabia,fabias)
importFrom(fabia,mfsc)
importFrom(fabia,nmfdiv)
importFrom(fabia,nmfeu)
importFrom(fabia,nmfsc)
importFrom(flashClust,flashClust)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.flush)
importFrom(grDevices,dev.hold)
importFrom(iBBiG,iBBiG)
importFrom(igraph,cluster_edge_betweenness)
importFrom(igraph,cluster_fast_greedy)
importFrom(igraph,cluster_infomap)
importFrom(igraph,cluster_label_prop)
importFrom(igraph,cluster_leading_eigen)
importFrom(igraph,cluster_louvain)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,graph_from_biadjacency_matrix)
importFrom(isa2,isa)
importFrom(isa2,isa.biclust)
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(ppclust,fcm)
importFrom(rJava,.jcall)
importFrom(rqubic,generateSeeds)
importFrom(rqubic,quBicluster)
importFrom(rqubic,quantileDiscretize)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,phyper)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(utils,write.table)
