Package: orthogene
Type: Package
Title: Interspecies gene mapping
Version: 1.16.1
Authors@R: 
    c( 
     person(given = "Brian",
           family = "Schilder",
           role = c("cre","fnd"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191"))
    )      
Description: `orthogene` is an R package for easy mapping of
        orthologous genes across hundreds of species. It pulls
        up-to-date gene ortholog mappings across **700+ organisms**. It
        also provides various utility functions to aggregate/expand
        common objects (e.g. data.frames, gene expression matrices,
        lists) using **1:1**, **many:1**, **1:many** or **many:many**
        gene mappings, both within- and between-species.
URL: https://github.com/neurogenomics/orthogene
BugReports: https://github.com/neurogenomics/orthogene/issues
License: GPL-3
Depends: R (>= 4.4.0)
VignetteBuilder: knitr
biocViews: Genetics, ComparativeGenomics, Preprocessing, Phylogenetics,
        Transcriptomics, GeneExpression
Imports: dplyr, methods, stats, utils, Matrix, jsonlite, homologene,
        gprofiler2, babelgene, data.table, parallel, ggplot2, ggpubr,
        patchwork, DelayedArray, repmis, ggtree, tools, magrittr
Suggests: rworkflows, remotes, knitr, BiocStyle, markdown, rmarkdown,
        testthat (>= 3.0.0), piggyback, magick, GenomeInfoDbData, ape,
        phytools, rphylopic (>= 1.0.0), TreeTools, ggimage, OmaDB
RoxygenNote: 7.3.3
Encoding: UTF-8
Config/testthat/edition: 3
Config/rcmdcheck/_R_CHECK_FORCE_SUGGESTS_: false
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-01-03 20:10:41 UTC
RemoteUrl: https://github.com/bioc/orthogene
RemoteRef: RELEASE_3_22
RemoteSha: f242052080296b7c8186bdc8fdfcb371e8ae1657
NeedsCompilation: no
Packaged: 2026-03-05 05:22:27 UTC; root
Author: Brian Schilder [cre, fnd] (ORCID:
    <https://orcid.org/0000-0001-5949-2191>)
Maintainer: Brian Schilder <brian_schilder@alumni.brown.edu>
Built: R 4.5.2; ; 2026-03-05 05:24:22 UTC; windows
