Package: pgxRpi
Title: R wrapper for Progenetix
Version: 1.6.0
Authors@R: 
    c(person(given = "Hangjia",
           family = "Zhao",
           role = c("aut", "cre"),
           email = "hangjia.zhao@uzh.ch",
           comment = c(ORCID = "0000-0001-8376-5751")),
      person(given = "Michael",
           family = "Baudis",
           role = c("aut"),
           email = "michael.baudis@mls.uzh.ch",
           comment = c(ORCID = "0000-0002-9903-4248")))
Description: The package is an R wrapper for Progenetix REST API built
        upon the Beacon v2 protocol. Its purpose is to provide a
        seamless way for retrieving genomic data from Progenetix
        database—an open resource dedicated to curated oncogenomic
        profiles. Empowered by this package, users can effortlessly
        access and visualize data from Progenetix.
biocViews: CopyNumberVariation, GenomicVariation, DataImport, Software
License: Artistic-2.0
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: utils, methods, grDevices, graphics, circlize, httr, dplyr,
        attempt, lubridate, survival, survminer, ggplot2,
        GenomicRanges, SummarizedExperiment, S4Vectors, yaml, parallel,
        future, future.apply
Depends: R (>= 4.2)
Suggests: BiocStyle, rmarkdown, knitr, testthat
BugReports: https://github.com/progenetix/pgxRpi/issues
URL: https://github.com/progenetix/pgxRpi
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libjpeg-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:26:40 UTC
RemoteUrl: https://github.com/bioc/pgxRpi
RemoteRef: RELEASE_3_22
RemoteSha: 2c9aee6d78ee1c5b207aa65863e507d4c2a8a11d
NeedsCompilation: no
Packaged: 2026-02-23 09:42:18 UTC; root
Author: Hangjia Zhao [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8376-5751>),
  Michael Baudis [aut] (ORCID: <https://orcid.org/0000-0002-9903-4248>)
Maintainer: Hangjia Zhao <hangjia.zhao@uzh.ch>
Built: R 4.5.2; ; 2026-02-23 09:44:35 UTC; windows
