Package: qsvaR
Title: Generate Quality Surrogate Variable Analysis for Degradation
        Correction
Version: 1.14.0
Date: 2025-09-29
Authors@R: 
    c(
    person("Joshua", "Stolz", email = "jstolz80@gmail.com",
        role = c("aut"),
        comment = c(ORCID = "0000-0001-5694-5247")),
	person("Hedia", "Tnani", email = "hediatnani0@gmail.com",
	    role = c("ctb"),
	    comment = c(ORCID = "0000-0002-0380-9740")),
    person("Leonardo", "Collado-Torres", role = c("ctb"),
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person("Nicholas J.", "Eagles", email = "nickeagles77@gmail.com",
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9808-5254"))
    )
Description: The qsvaR package contains functions for removing the
        effect of degration in rna-seq data from postmortem brain
        tissue. The package is equipped to help users generate
        principal components associated with degradation. The
        components can be used in differential expression analysis to
        remove the effects of degradation.
License: Artistic-2.0
URL: https://github.com/LieberInstitute/qsvaR
BugReports: https://support.bioconductor.org/t/qsvaR
biocViews: Software, WorkflowStep, Normalization, BiologicalQuestion,
        DifferentialExpression, Sequencing, Coverage
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: BiocFileCache, BiocStyle, covr, knitr, limma, RefManageR,
        rmarkdown, sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports: dplyr, sva, stats, ggplot2, rlang, methods
Depends: R (>= 4.2), SummarizedExperiment
LazyData: true
VignetteBuilder: knitr
Config/pak/sysreqs: libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:15:51 UTC
RemoteUrl: https://github.com/bioc/qsvaR
RemoteRef: RELEASE_3_22
RemoteSha: f960098bb82deed03ed0b393f4d9cbe9e14297d0
NeedsCompilation: no
Packaged: 2026-03-04 08:50:39 UTC; root
Author: Joshua Stolz [aut] (ORCID: <https://orcid.org/0000-0001-5694-5247>),
  Hedia Tnani [ctb] (ORCID: <https://orcid.org/0000-0002-0380-9740>),
  Leonardo Collado-Torres [ctb] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>),
  Nicholas J. Eagles [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9808-5254>)
Maintainer: Nicholas J. Eagles <nickeagles77@gmail.com>
Built: R 4.5.2; ; 2026-03-04 08:52:57 UTC; windows
