Package: supersigs
Title: Supervised mutational signatures
Version: 1.18.0
Date: 2021-12-02
Authors@R: c(person(given = "Albert", 
                    family = "Kuo",
                    role = c("aut", "cre"),
                    email = "albertkuo@jhu.edu", 
                    comment = c("ORCID" = "0000-0001-5155-0748")),
             person(given = "Yifan", 
                    family = "Zhang",
                    role = c("aut")),
             person(given = "Bahman", 
                    family = "Afsari",
                    role = c("aut")),
             person(given = "Cristian", 
                    family = "Tomasetti",
                    role = c("aut"))) 
Depends: R (>= 4.1)
Imports: assertthat, caret, dplyr, tidyr, rsample, methods, rlang,
        utils, Biostrings, stats, SummarizedExperiment
Suggests: BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38,
        knitr, rmarkdown, ggplot2, testthat, VariantAnnotation
Description: Generate SuperSigs (supervised mutational signatures) from
        single nucleotide variants in the cancer genome. Functions
        included in the package allow the user to learn supervised
        mutational signatures from their data and apply them to new
        data. The methodology is based on the one described in Afsari
        (2021, ELife).
biocViews: FeatureExtraction, Classification, Regression, Sequencing,
        WholeGenome, SomaticMutation
BugReports: https://github.com/TomasettiLab/supersigs/issues
URL: https://tomasettilab.github.io/supersigs/
License: GPL-3
Encoding: UTF-8
LazyData: true
LazyDataCompression: gzip
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:08:53 UTC
RemoteUrl: https://github.com/bioc/supersigs
RemoteRef: RELEASE_3_22
RemoteSha: 44913f5625ca919ac5d5331ad106cbd0bcc659b6
NeedsCompilation: no
Packaged: 2026-01-24 20:02:23 UTC; root
Author: Albert Kuo [aut, cre] (ORCID: <https://orcid.org/0000-0001-5155-0748>),
  Yifan Zhang [aut],
  Bahman Afsari [aut],
  Cristian Tomasetti [aut]
Maintainer: Albert Kuo <albertkuo@jhu.edu>
Built: R 4.5.2; ; 2026-01-24 20:05:46 UTC; windows
