Type: Package
Package: tidybulk
Title: Brings transcriptomics to the tidyverse
Version: 2.0.1
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")),
            person("Maria", "Doyle", email = "Maria.Doyle@petermac.org",
            role = c("ctb"))
                  )
Description: This is a collection of utility functions that allow to
        perform exploration of and calculations to RNA sequencing data,
        in a modular, pipe-friendly and tidy fashion.
License: GPL-3
Depends: R (>= 4.4.0), ttservice (>= 0.3.6)
Imports: tibble, dplyr (>= 1.1.0), magrittr, tidyr, stringr, rlang,
        purrr, tidyselect, stats, parallel, utils, lifecycle, scales,
        ggplot2, SummarizedExperiment, GenomicRanges, methods,
        S4Vectors, crayon, Matrix
Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
        Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
        GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, widyr,
        clusterProfiler, msigdbr, DESeq2, broom, survival, boot,
        betareg, tidyHeatmap, pasilla, ggrepel, devtools, functional,
        survminer, tidySummarizedExperiment, markdown, uwot,
        matrixStats, preprocessCore, igraph, EGSEA, IRanges, here,
        glmmSeq, pbapply, pbmcapply, lme4, glmmTMB, MASS, pkgconfig,
        enrichplot, patchwork, airway
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidybulk
BugReports: https://github.com/stemangiola/tidybulk/issues
Config/pak/sysreqs: make libicu-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-11-11 23:31:52 UTC
RemoteUrl: https://github.com/bioc/tidybulk
RemoteRef: RELEASE_3_22
RemoteSha: 8c311d74ef3512e9d843b2e41560138938383671
NeedsCompilation: no
Packaged: 2026-02-25 09:22:32 UTC; root
Author: Stefano Mangiola [aut, cre],
  Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.5.2; ; 2026-02-25 09:27:14 UTC; windows
